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PUBLICATIONS

Publications de chapitres de livre

2019

  • 3- Vincent A.T., Paquet V.E., Moineau S., Charette S.J. (2019) Would Bacteriophages Be a New Old Complement to Antibiotics in Aquaculture? In: Derome N. (eds) Microbial Communities in Aquaculture Ecosystems. Springer, Cham.

  • 2- Gauthier J., Lavoie C., Charette S.J., Derome N. (2019) Host-Microbiota Interactions and Their Importance in Promoting Growth and Resistance to Opportunistic Diseases in Salmonids. In: Derome N. (eds) Microbial Communities in Aquaculture Ecosystems. Springer, Cham.

  • 1- Vincent A.T., Gauthier J., Derome N., Charette S.J. (2019) The Rise and Fall of Antibiotics in Aquaculture. In: Derome N. (eds) Microbial Communities in Aquaculture Ecosystems. Springer, Cham.

 

 

Publications d’articles dans des journaux scientifiques

2024​

  • 147-Gélinas V., Paquet V.E., Paquet M.F., Vincent A.T. and Charette S.J. (2024) Whole-genome-based taxonomy as the most accurate approach to identify Flavobacterium species. FEMS Microbiol Lett. In press.

  • 146-Durocher A.F., Paquet V.E., St-Laurent R.E., Duchaine C. and Charette S.J. (2024) Impact of predation by the ciliate Tetrahymena borealis on conjugation in Aeromonas salmonicida subsp. salmonicida. Antibiotics. 13:960.

  • 145-St-Laurent R.E., Vincent A.T., Paquet V.E., Leduc G.R., Lorenc N., Ronholm J., Liu X. and Charette S.J. (2024) Characterization of Aeromonas salmonicida mesophilic isolates from Alberta (Canada) allows the development of a more sensitive Dictyostelium discoideum predation test. FEMS Microbiol Lett. fnae078.

  • 144-Gélinas V., Paquet V.E., Paquet M.F., Charette S.J., Vincent A.T. (2024) Specific amino acid changes correlate with pathogenic flavobacteria. Genome. 67:368-377.

  • 143-Girard S.B., Marcoux P.E., Paquet V.E., Zoubaï S., Can T.N.V., Attéré S.A., Vincent A.T., and Charette S.J.(2024) Expansion of the tetracycline resistome in Aeromonas salmonicida with a tet(D) gene found in plasmids pAsa-2900 and pAsa-2900b. 3:1418706.

  • 142-Hosseini N, Chehreghani M, Moineau S, Charette SJ. (2024) Centroid of the bacterial growth curves: a metric to assess phage efficiency. Commun Biol. 7:673.

  • 141-Fradette M.S., Bourque S.L., Rodriguez M.J., Charette S.J. (2024) Year-round monitoring of three water sources in Québec, Canada, reveals site-specific differences in conditions for Cryptosporidium and Giardia contamination. Can J Microbiol. 70:262-274.

  • 140-Attéré S.A., Piché L., Intertaglia L, Lami R, Charette S.J., and Vincent A.T. (2024) Complete sequences of two Paenibacillus sp. strains and one Lysinibacillus strain isolated from the environment on STAA medium highlight biotechnological potential. Microbiology Resource Anouncements. 13(6):e0019924.

2023​

  • 139-Marcoux P.E., Girard S.B., Fournier K.C., Tardif C.A., Gosselin A. and Charette S.J. (2023) Interaction of pAsa5 and pAsa8 Plasmids in Aeromonas salmonicida subsp. salmonicida. Microorganisms. 11, 2685.

  • 138-Marti H., Biggel M., Shima K., Onorini D., Rupp J., Charette S.J. and Borel N. (2023) Chlamydia suis displays high transformation capacity with complete chromosomal integration into the intergenic rrn-nqrF plasticity zone. Spectrum. 02378-23.

  • 137-Gagné-Thivierge C., Vincent A.T., Paquet V.E., Gauthier M.L., Denicourt M., Lambert M.E., Charette S.J. (2023) Draft genome sequences of four Staphylococcus hyicus strains, SC302, SC304, SC306, and SC310, isolated from swine from Eastern Canada. Microbiology Resource Anouncements. 12:e0062623.

  • 136-Hosseini N., Paquet V.E., Marcoux P.-M., Alain C.-A., Paquet M.F., Moineau S. and Charette S.J. (2023) MQM1, a bacteriophage infecting strains of Aeromonas salmonicida subspecies salmonicida carrying Prophage 3. Virus Research. 334:199165.

  • 135-Charette S.J. (2023) Aeromonas salmonicida: genomics, taxonomy, diversity, pathogenesis, treatments and beyond. Microorganisms. 11:1189.

  • 134-Mohammadi S., Leduc A., Charette S.J., Barbeau J., Vincent A.T. (2023) Amino acid substitutions in specific proteins correlate with farnesol unresponsiveness in Candida albicans. BMC Genomics. 24:93.

  • 133*-Attéré S.A., Gagné-Thivierge C., Paquet V.E., Leduc G.R., Vincent A.T., Charette S.J. (2023) Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains. Genome. 66:108-115.This article has been selected as this month's Editor's Choice.

  • 132-Marcoux P.E., Attéré S.A., Paquet V.E., Paquet M.F., Girard S.B., Farley J., Frenette M., Vincent A.T., Charette S.J. (2023) Host Dependent-transposon for a plasmid found in Aeromonas salmonicida subsp. salmonicida that bears a catB3 gene for chloramphenicol resistance. Antibiotics. 12:257.

  • 131-Leduc G.R., Paquet V.E., Piché L., Vincent A.T. and Charette S.J. (2023) Isolation of vB_AsaM_LPM4 reveals the dynamics of Prophage 3 in Aeromonas salmonicida subsp. salmonicida. Archives of virology. 168:72.

 

2022

  • 130-Castonguay M.L., Paré I., Charette S.J. and Loubaki L. (2022) Development of a cellular-based assay for measuring the anti-inflammatory potency of donor banked milk. Archives in Pediatrics. 7:224

  • 129*-Fournier K.C. Paquet V.E., Attéré S.A., Farley J., Marquis H., Gantelet H., Ravaille C., Vincent A.T., Charette S.J. (2022) Expansion of the pRAS3 plasmid family in Aeromonas salmonicida subsp. salmonicida and growing evidence of interspecies connections for these plasmids. Microorganisms. 11:1047.

  • Article dans la catégorie “Editor choice’’.

  • 128-Paul B.L.G., [6 authors], Charette S.J., [20 authors], Paquet V.E., [11 authors], Durocher A.F., Girard S.B., [11 authors], Turgeon N., Duchaine C. (2022) Antibiotic resistance in the environment: towards elucidating the roles of bioaerosols in their transmission and detection of antibacterial resistance genes. Antibiotics, 11:974.

  • 127-Paquet V.E., Durocher A.F. and Charette S.J. (2022) Aeromonas salmonicida intra-species divergence revealed by the various strategies displayed when grazed by Tetrahymena pyriformis. FEMS Microbiology letters. 369:fnac067.

  • 126-Fradette M.-S. and Charette S.J. (2022) Working toward improved monitoring of Cryptosporidium and Giardia (oo)cysts in water samples: testing alternatives to elution and immunomagnetic separation from USEPA Method 1623.1. BMC Res. Notes. 15:254.

  • 125-Fradette M.-S., Culley A.I. and Charette S.J. (2022) Detection of Cryptosporidium sp. and Giardia sp. in environmental water samples: a journey to the past and new perspectives. Microorganisms 10:1175.

  • 124-Vincent A.T. and Charette S.J. (2022) To be or not to be mesophilic, that is the question for Aeromonas salmonicida. Microorganisms. 10:240.

  • 123-Vasquez I., Hossain A., Gnanagobal H., Valderrama K., Campbell B., Ness M., Charette S.J., Gamperl A.K., Cipriano R., Segovia C., Santander J. (2022) Comparative genomics of typical and atypical Aeromonas salmonicida subsp. salmonicida strains revealed new insights into pathogenesis evolution. Microorganisms. 10:189.

  • 122-Greener J., Harvey W.Y., Gagné-Thivierge C., Fakhari S., N., Taghavi S.M., Barbeau J. and Charette S.J. (2022) Critical shear stresses of Pseudomonas aeruginosa biofilms from dental unit waterlines studied using microfluidics and additional magnesium ions. Physics of Fluids. 34, 021902.

  • 121-Fonseca S., Cayer M.P., Ahmmed K.M.T., Khadem-Mohtaram N., Charette S.J., Brouard D. (2022) Characterization of the antibacterial activity of an SiO2 nanoparticular coating to prevent bacterial contamination in blood products. Antibiotics. 11:107.

  • 120-Girard S.B., Paquet V.E. and Charette S.J. (2022) Improvements of virulence factor phenotypic tests for Aeromonas salmonicida subsp. salmonicida, a major fish pathogen. J. Fish Dis. 45:177-184.

 

2021

  • 119-Hosseini N., Paquet V.E., Chehreghani M., Moineau S., Charette S.J. (2021) Phage cocktail development against Aeromonas salmonicida subsp. salmonicida strains is compromised by a prophage. Viruses. 13:2241.

  • 118-Gauthier J., Marquis H., Paquet V.E., Charette S.J., Levesque R.C., and Derome N. (2021) Genomic perspectives on Aeromonas salmonicida subsp. salmonicida strain 890054 as a model system for pathogenicity studies and mitigation of fish infections. Frontiers in Marine Science. 8:744052.

  • 117-Vaillancourt K.C., Paquet V.E., Vincent A.T., Schneider A., Thompson C., Laurent M., Frenette M. and Charette S.J. (2021) Draft genome sequence of an Aeromonas salmonicida subsp. salmonicida strain from Canadian Pacific coast bearing a variant of pRAS1. Microbiology Resource Anouncements. 10:e00291-21.

  • 116-Charette S.J. (2021) Microbe profile Aeromonas salmonicida: an opportunistic pathogen with multiple personalities. Microbiology. 167.

  • 115-Vincent A.T., Intertaglia L., Loyer V., Paquet V.E., Adouane E., Martin P., Bérard C., Lami R., Charette S.J. (2021) AsaGEI2d: a new variant of a genomic island identified in a group of Aeromonas salmonicida subsp. salmonicida isolated from France, which bears the pAsa7 plasmid. FEMS Microbiol Letters. 368(4):fnab021.

  • 114-Leduc G.R., Paquet V.E., Vincent A.T. and Charette S.J. (2020) Characterization of bacteriophage T7-Ah reveals its lytic activity against a subset of both mesophilic and psychrophilic Aeromonas salmonicida strains. Archives of virology. 166:521-533.

 

2020

  • 113-Marcoux P.E., Vincent A.T., Massicotte M.A., Paquet V.E., Doucet E., Hosseini N., Trudel M.V., Byatt G., Laurent M., Frenette M. and Charette S.J. (2020) Systematic analysis of the stress-induced genomic instability of type three secretion system in Aeromonas salmonicida subsp. salmonicida. Microorganisms. 9:85.

  • 112-Cruaud P., Vigneron A., Dorea C.C., Rodriguez M.J. and Charette S.J. (2020) Rapid changes in microbial community structures along a meandering river. Microoganisms. 8:1631.

  • 111*-Durocher A.F. Denoncourt A.M. Paquet V.E., Charette S.J. (2020) Evidence that bacteria packaging by Tetrahymena is a widespread phenomenon. Microorganisms. 8:1548. *Une image de cet article a été choisie pour la page couverture de ce journal.

  • 110-Vincent A.T., Hosseini N. and Charette S.J. The Aeromonas salmonicida plasmidome: a model of modular evolution and genetic diversity. Ann N Y Acad Sci. doi: 10.1111/nyas.14503

  • 109-Durocher A.F. Gagné-Thivierge C. and Charette S.J. (2020) Various dictyostelids from the environment can produce multilamellar bodies. Canadian Journal of Microbiology. 66:679-688.

  • 108-Trudel L, Deveau H., Gagné-Thivierge C. and Charette S.J. (2020) The course “Microbes and You”: A concrete example that addresses the urgent need for microbiology literacy in society. Journal of Microbiology & Biology Education. 21:21.2.63.

  • 107-Pham V.D., To T.A., Gagné-Thivierge C., Couture M., Lagüe P., Yao D., Picard M.E., Lortie L.A., Attéré S.A., Zhu X., Levesque R.C., Charette S.J., and Shi R. (2020) Structural insights into the putative bacterial acetylcholinesterase ChoE and its substrate inhibition mechanism. J. Biol. Chem. 295:8708-8724.

  • 106-Robidoux J., Laforce-Lavoie A., Charette S.J., Shevkoplyas S., Yoshida T., Brouard D. (2020) Development of a flow standard to enable highly reproducible measurements of deformability of stored red blood cells in a microfluidic device. Transfusion. 60:1032-1041.

  • 105-Cruaud P., Vigneron A., Fradette M.-S., Dorea C.C., Culley A.I., Rodriguez M.J. and Charette S.J. (2020) Annual microbial community cycle in a seasonally ice-covered river reflects environmental and climatic conditions. Limnology and Oceanography. S21-S37.

 

2019

  • 104-Vincent A.T., Bernatchez A., Frey J., Charette S.J. (2019) A mesophilic Aeromonas salmonicida strain isolated from an unsuspected host, the migratory bird pied avocet. Microorganisms, 7: 592.

  • 103-Cruaud P., Vigneron A., Fradette M.-S., Dorea C.C., Culley A.I., Rodriguez M.J. and Charette S.J. (2019) Annual protist community dynamics in a freshwater ecosystem undergoing contrasted climatic conditions: the Saint-Charles River (Canada). Frontiers in microbiology, 10: 2359.

  • 102-Vincent A.T., Le Breton A., Bernatchez A., Gagné-Thivierge C., Paquet V.E., Thibault E., Charette S.J. and Gantelet H. (2019) Draft genome sequences of four Aeromonas salmonicida subsp. achromogenes strains, 23051, 23053, 23055, and 23056, isolated from senegalese sole (Solea senegalensis). Microbiology Resource Anouncements, 8 (33) e00631-19.

  • 101-Gauthier J., Rouleau-Breton S., Charette S.J. and Derome N. (2019) Stimulated growth and innate immunity in brook charr (Salvelinus fontinalis) treated with a general probiotic (Bactocell®) and two endogenous probiotics that inhibit Aeromonas salmonicida in vitro. Microorganims. 7(7).

  • 100-Massicotte M.-A., Vincent A.T., Schneider A., Paquet V.E., Frenette M. and Charette S.J. (2019) One Aeromonas salmonicida subsp. salmonicida isolate with a pAsa5 variant bearing antibiotic resistance and a pRAS3 variant making a link with a swine pathogen. Science of the Total Environment. 690:313-32.

  • 99-Vogeleer P., Vincent A.T., Chekabab S.M., Charette S.J., Novikov A., Caroff M., Beaudry F., Jacques M., and Harel J. (2019) Regulation of waaH by PhoB during Pi starvation promotes biofilm formation by Escherichia coli O157:H7. Journal of bacteriology, 201:e00093-19.

  • 98-Paquet V.E., Vincent A.T., Moineau S. and Charette S.J. (2019) Beyond the A-layer: adsorption of lipopolysaccharides and characterization of bacteriophage-insensitive mutants of Aeromonas salmonicida subsp. salmonicida. Molecular microbiology,112:667-677.

  • 97-Zarabadi M., Couture M., Charette S.J. and Greener J. (2019) A generalized kinetic framework for whole-cell bioelectrocatalysis in flow reactors clarifies performance enhancements. ChemElectroChem, 6:2715.

  • 96*-Zarabadi M., Charette S.J. and Greener J. (2019) Toggling Geobacter sulfurreducens metabolic state reveals hidden behaviour and expanded applicability to sustainable energy applications. Sustainable Energy & Fuels. 3 :2211-2217.

  • *Une image de cet article a été choisie pour la page couverture de ce journal.

  • 95-Jeukens J., Freschi L., Kukavica-Ibrulj I., Emond-Rheault J.-G., Allard C., Barbeau J., Cantin A., Charette S.J., Déziel E., Malouin F., Milot J., Nguyen D., Popa C., Boyle B. and Levesque R.C. (2019) The Pseudomonas aeruginosa population among Cystic Fibrosis patients in Quebec, Canada: a disease hotspot with no epidemic isolates. Journal of Clinical Microbiology. 57:e02019-18.

  • 94-Vincent A.T., Fernández-Bravo A., Sanchis M., Mayayo E., Figueras M.J., Charette S.J. (2019) Investigation of the virulence and genomics of Aeromonas salmonicida strains isolated from human patients. Infection, Genetics and Evolution. 68:1-9.

  • 93-Freschi L., Vincent A.T., Jeukens J., Emond-Rheault J.-G., Kukavica-Ibrulj I., Dupont M.-J., Charette S.J., Boyle B. and Levesque R.C. (2019) The Pseudomonas aeruginosa pan-genome provides new insights on its population structure, horizontal gene transfer and pathogenicity. Genome Biology and Evolution. 11:109-120.

 

2018

  • 92-Zarabadi M., Charette S.J. and Greener J. (2018) Flow-based deacidification of Geobacter sulfurreducens biofilms depends on nutrient conditions: a microfluidic bioelectrochemical study. ChemElectroChem. 5, 3645–3653.

  • 91-Gauthier J., Vincent A.T., Charette S.J. and Derome N. (2018) A Brief History of Bioinformatics. Briefings in Bioinformatics. 1-16.

  • 90-Gagné-Thivierge C., Barbeau J., Levesque R.C. and Charette S.J. (2018) A new approach to study attached and floating biofilms produced by Pseudomonas aeruginosa strains of various origins reveals various effects of divalent ions on these structures. FEMS Microbiol letters. 365:14.

  • 89-Vincent A.T. and Charette S.J. (2018) Completion of the genome of A. salmonicida subsp. salmonicida 01-B526 reveals how sequencing technologies can influence sequence quality and result interpretations. New microbes and new infections. 25:24-26.

  • 88-Gagné-Thivierge C., Kukavica-Ibrulj I., Filion G., Dekimpe V., Tan S.G.E., Vincent A.T., Deziel E. and Levesque R.C. and Charette S.J. (2018) A multi-host approach to identify a transposon mutant of Pseudomonas aeruginosa LESB58 lacking full virulence. BMC Research Notes. 11:198.

  • 87-Vincent A.T., Charette S.J., Barbeau J., (2018) Unexpected diversity in the mobilome of a Pseudomonas aeruginosa strain isolated from a dental unit waterline revealed by SMRT Sequencing. Genome. 61:359-365.

  • 86-Rouleau F.D., Vincent A.T. and Charette S.J. (2018) Formation of unusual granular structures by an atypical Aeromonas salmonicida strain isolated from lumpfish. J. Fish Dis. 41:673-681.

  • 85-Vincent A.T., Bourbonnais Y., Brouard J.-S., Deveau H., Droit A., Gagné S.M., Guertin M., Lemieux C., Rathier L., Charette S.J. and Lagüe P. (2018) Implementing a web-based introductory bioinformatics course for non-bioinformaticians that incorporates practical exercises. Biochemistry and Molecular Biology Education. 46 :31–38.

 

2017

  • 84-Cruaud P., Vigneron A., Fradette M.-S., Charette S.J., Rodriguez M.J., Dorea C.C., and Culley A.I. (2017) Open the SterivexTM casing: an easy and effective way to improve DNA extraction yields. Limnology and Oceanography: Methods. 15:1015-1020.

  • 83-Attéré S.A, Vincent A.T., Paccaud M., Frenette M. and Charette S.J. (2017) The role for the small cryptic plasmids as moldable vectors for genetic innovation in Aeromonas salmonicida subsp. salmonicida. Front. Genet. 8 :211.

  • 82-Vincent A.T., Rouleau F.D., Moineau S. and Charette S.J. (2017) Study of mesophilic Aeromonas salmonicida A527 strain sheds light on the species lifestyles and taxonomic dilemma. FEMS Microbiol letters. 364:fnx239.

  • 81-Denoncourt A.M., Paquet V.E. and Charette S.J. (2017) Packaging of Mycobacterium smegmatis into fecal pellets by the ciliate Tetrahymena pyriformis. FEMS Microbiol letters. 364:fnx237.

  • 80-Gauthier J., Vincent A.T., Charette S.J. and Derome N. (2017) Strong genomic and phenotypic heterogeneity in the Aeromonas sobria species complex. Front. Microbiol. 2434.

  • 79-Denoncourt A.M., Durocher A.F., Paquet V.E. and Charette S.J. (2017) The fate of multilamellar bodies produced and secreted by Dictyostelium discoideum amoebae. Eur J Cell Biol. 96:767-773.

  • 78-Vincent A.T., Freschi L., Jeukens J., Kukavica-Ibrulj I., Emond-Rheault J.-G., Leduc A., Boyle B., Jean-Pierre F., Groleau M.-C., Déziel E., Barbeau J., Charette S.J., Levesque R.C. (2017) Genomic characterization of environmental Pseudomonas aeruginosa isolated from dental unit waterlines revealed ISPa11 as a chaotropic element. FEMS Microbiol Ecol. fix106. (93:9)

  • 77-Tanaka K.H., Vincent A.T., Emond-Rheault J.-G., Adamczuk M., Frenette M. and Charette S.J. (2017) Plasmid composition in Aeromonas salmonicida subsp. salmonicida 01-B526 unravels unsuspected type three secretion system loss patterns. BMC Genomics. 18:528.

  • 76-Vincent A.T., Paquet V.E., Bernatchez A., Tremblay D., Moineau S. and Charette S.J. (2017) Characterization and diversity of phages infecting Aeromonas salmonicida subsp. salmonicida. Scientific Reports. 7:7054.

  • 75-Jeukens J., Freschi L., Vincent A.T., Emond-Rheault J.-G., Kukavica-Ibrulj I., Charette S.J. and Levesque R.C. (2017) A pan-genomic approach to understand the basis of host adaptation in Achromobacter. Genome Biology and Evolution. 9:4.

  • 74-Vincent A.T. and Charette S.J. (2017) Phylogenetic analysis of the fish pathogen Aeromonas salmonicida underlines the dichotomy between European and Canadian strains for the salmonicida subspecies. J Fish Dis, 40:1241-1247.

  • 73-Gagnon C.A., Kist Traesel C., Music N., Laroche J., Tison N., Auger J.-P., Music S., Provost C., Bellehumeur C., Abrahamyan L., Carman S., DesCôteaux L., and Charette S.J. (2017) Whole genome sequencing of a Canadian Bovine gammaherpesvirus 4 strain and the possible link between the viral infection and respiratory and reproductive clinical manifestations in dairy cattle. Frontiers in Veterinary Science. 4:92.

  • 72-Vincent A.T., Derome N., Boyle B., Culley A.I. and Charette S.J. (2017) Next-generation sequencing (NGS) in the microbiological world: how to make the most of your money. J. Microbiol. Methods. 138:60–71.

  • 71*-Zarabadi M., Paquet-Mercier F., Charette S.J. and Greener J. (2017) Real-time electrochemical impedance spectroscopy of surface-anchored biofilm layers under different hydrodynamic conditions in microchannels. Langmuir, 33:2041-2049. * Cet article a été choisi dans le « Journal Club » de Langmuir pour le mois de sa publication.

  • 70-Gauthier J., Charette S.J. and Derome N. (2017) Draft genome sequence of Pseudomonas fluorescens ML11A, an endogenous strain from Brook charr with antagonistic properties against Aeromonas salmonicida subsp. salmonicida. Genome annoucement, 5:e01716-16.

 

2016

  • 69-Trudel M.V.#, Vincent A.T.#, Attéré S.A., Labbé M., Derome N., Culley A.I. and Charette S.J. (2016) Diversity of antibiotic-resistance genes in Canadian isolates of Aeromonas salmonicida subsp. salmonicida: dominance of pSN254b and discovery of pAsa8. Sci Rep, 6:35617.

  • 68-Tanaka K.H., Vincent A.T., Trudel M.V., Paquet V.E., Frenette M. and Charette S.J. (2016) The mosaic architecture of Aeromonas salmonicida subsp. salmonicida pAsa4 plasmid and its consequences on antibiotic resistance. PeerJ, e2595.

  • 67-Denoncourt A.M., Paquet V.E., Sedighi A., and Charette S.J. (2016) Identification of proteins associated with multilamellar bodies produced by Dictyostelium discoideum. PLoS ONE 11:6: e0158270.

  • 66-Vincent A.T., Emond-Rheault J.-G., Barbeau X., Attéré S.A., Frenette M., Lagüe P. and Charette S.J. (2016) Antibiotic resistance due to an unusual ColE1-type replicon plasmid in Aeromonas salmonicida. Microbiology. 162(6):942-53.

  • 65*-Trigui H.#, Paquet V.E.#, Charette S.J.# and Faucher S.P.# (2016) Packaging of Campylobacter jejuni into multilamellar bodies by the ciliate Tetrahymena pyriformis. Appl Environ Microbiol. 82:2783-90.

  • *Cette étude a été retenue par les éditeurs du journal comme un article d’importance (http://aem.asm.org/content/82/9/2573.full).

  • 64-Paquet V.E. and Charette S.J. (2016) Amoeba-resisting bacteria found in multilamellar bodies secreted by Dictyostelium discoideum: social amoebae can also package bacteria. FEMS Microbiol Ecol. 92:fiw025.

  • 63-Vincent A.T., Trudel M.V., Freschi L., Nagar V., Gagné-Thivierge C., Levesque R.C. and Charette S.J. (2016) Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida. BMC Genomics. 17 :44.

  • 62-Périnet S., Jeukens J., Kukavica-Ibrulj I., Ouellet M.M., Charette S.J. and Levesque R.C. (2016) Molybdate transporter ModABC is essential for Pseudomonas aeruginosa chronic lung infection. BMC Res Notes. 9 :23.

 

2015

  • 61-Attéré S.A., Vincent A.T., Trudel M.V., Chanut R. and Charette S.J. (2015) Diversity and homogeneity among small plasmids of Aeromonas salmonicida subsp. salmonicida linked with geographical origin. Front. Microbiol. 6:1274.

  • 60-Freschi L., Jeukens J., Kukavica-Ibrulj I., Boyle B., Dupont M.-J., Laroche J., Larose S., Maaroufi H., Fothergill J.L., Moore M., Winsor G.L., Aaron S.D., Barbeau J., Bell S.C., Burns J.L., Camara M., Cantin A., Charette S.J., Dewar K., Déziel É., Grimwood K., Hancock R.E.W., Harrison J.J., Heeb S., Jelsbak L., Jia B., Kenna D.T., Kidd T.J., Klockgether J., Lam J.S., Lamont I.L., Lewenza S., Loman N., Malouin F., McArthur A.G., McKeown J., Milot J., Naghra H., Nguyen D., Pereira S.K., Perron G.G., Rainey P.B., Rousseau S., Santos P.M., Stephenson A., Taylor V., Turton J.F., Waglechner N., Williams P., Thrane S.W., Wright G.D., Brinkman F.S.L., Tucker N.P., Tümmler B., Winstanley C. and Levesque R.C. (2015) Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Front. Microbiol. 6:1036.

  • 59-Bellehumeur C. Boyle B., Charette S.J., Harel J., L’Homme Y, Masson L., Gagnon C.A. (2015) Propidium monoazide (PMA) and ethidium bromide monoazide (EMA) improve DNA array and high-throughput sequencing of porcine reproductive and respiratory syndrome virus identification. J. Virol Meth. 222:182-91.

  • 58-Emond-Rheault J.G., Vincent A.T., Trudel M.V., Frey J., Frenette M. and Charette S.J. (2015) AsaGEI2b: a new variant of a genomic island revealed in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland. FEMS Microbiol letters. 362, fnv093.

  • 57-Vincent A.T. and Charette S.J. (2015) Who qualifies to be a bioinformatician? Front Genetics. 6:164.

  • 56-Faucher S.P and Charette S.J. (2015) Editorial on bacterial pathogens in the non-clinical environment. Front Microbiol. 6:331.

  • 55-Ouellet M.M., Leduc A., Nadeau C., Barbeau J. and Charette S.J. (2015) Pseudomonas aeruginosa isolates from dental unit waterlines can be divided in two distinct groups, including one displaying phenotypes similar to isolates from cystic fibrosis patients, Front Microbiol. 5:802.

  • 54-Vincent A.T., Tanaka K.H., Trudel M.V., Frenette M., Derome N. and Charette S.J. (2015) Draft genome sequences of two Aeromonas salmonicida subsp. salmonicida isolates harboring plasmids conferring antibiotic resistance. FEMS Microbiology Letters, 362, fnv002.

  • 53-Emond-Rheault J.G., Vincent A.T., Trudel M.V., Brochu F., Boyle B., Tanaka K.H., Attéré S.A., Jubinville E., Loch T.P., Winters A.D., Faisal M., Frenette M., Derome N., and Charette S.J. (2015) Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins. Vet Microbiol, 175:68-76.

 

2014

  • 52-Vincent A.T.#, Boyle B.#, Derome N., and Charette S.J. (2014) Improvement in the DNA sequencing of genomes bearing long repeated elements. J. Microbiol. Methods, 107:186-8.

  • 51-Vincent A.T.#, Trudel M.V.#, Paquet V.E., Boyle B., Tanaka K.H., Dallaire-Dufresne S., Daher R.K., Frenette M., Derome N., and Charette S.J. (2014) Detection of variants of the pRAS3, pAB5S9, and pSN254 plasmids in Aeromonas salmonicida subsp. salmonicida: multidrug resistance, interspecies exchanges, and plasmid reshaping. Antimicrob Agents Chemother, 58:7367-74.

  • 50-Baïlo N., Cosson P., Charette S.J., Paquet V.E., Doublet P. and Letourneur F., (2014) Defective lysosome maturation and Legionella pneumophila replication in Dictyostelium ArfGAP ACAP-A mutant cells. J Cell Sci, 127:4702-13.

  • 49-Vincent A.T., and Charette S.J. (2014) Freedom in bioinformatics. Front Genet, 5:259.

  • 48-Haas B., Bonifait L., Vaillancourt K., Charette S.J., Gottschalk M., and Grenier D. (2014) Characterization of DNase activity and gene in Streptococcus suis and evidence for a role as virulence factor. BMC Res Notes. 7:424.

  • 47-Dallaire-Dufresne S., Tanaka K.H., Trudel M.V., Lafaille A. and Charette S.J. (2014) Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis. Vet. Micro. 169 :1-7.

  • 46-Denoncourt A.M., Paquet V.E. and Charette S.J. (2014) Potential role of bacteria packaging by protozoa in the persistence and transmission of pathogenic bacteria. Front Microbiol. 5:240.

  • 45-Filion G. and Charette S.J. (2014) Assessing Pseudomonas aeruginosa virulence using a nonmammalian host: Dictyostelium discoideum. Methods Mol Biol, 1149:671-80

  • 44-Jeukens J., Boyle B., Kukavica-Ibrulj I., Ouellet M.M., Aaron S.D., Charette S.J., Fothergill J.L., Tucker N.P., Winstanley C., Levesque R.C. (2014) Comparative genomics of isolates of a Pseudomonas aeruginosa epidemic strain associated with chronic lung infections of cystic fibrosis patients. PLoS One, 9: e87611.

  • 43-Dallaire-Dufresne S., Emond-Rheault J.-G., Attéré S.A., Tanaka K.H., Trudel M.V., Frenette M. and Charette S.J. (2014) Optimization of a plasmid electroporation protocol for Aeromonas salmonicida subsp. salmonicida. J. Microbiol. Methods, 98C:44-49.

  • 42-Berthiaume C., Gilbert Y., Fournier-Larente J., Pluchon C., Filion G., Jubinville E., Sérodes J.-B., Rodriguez Pinzon M. J., Duchaine C. and Charette S. J. (2014) Identification of dichloroacetic acid degrading Cupriavidus bacteria in a drinking water distribution network model. J Appl Microbiol. 116:208-221.

 

2013

  • 41-Dallaire-Dufresne S., Barbeau X., Sarty D., Tanaka K.H., Denoncourt A.M., Lague P., Reith M., and Charette S.J. (2013) Aeromonas salmonicida Ati2 is an effector protein of the type three secretion system, which has an inositol polyphosphate 5-phosphatase activity required for host cell toxicity. Microbiology. 159:1937-45.

  • 40*-Paquet V.E., Lessire R., Domergue F., Fouillen L., Filion G., Sedighi A. and Charette S.J. (2013) Lipid composition of multilamellar bodies secreted by Dictyostelium discoideum reveals their amoebal origin. Euk. Cell. 12:1326-34.

  • *Une image de cet article a été choisie pour la page couverture de ce journal.

  • 39*-Trudel M.V., Tanaka K.H., Filion G., Daher K.R., Frenette M. and Charette S.J. (2013) Insertion sequence AS5 (ISAS5) is involved in the genomic plasticity of Aeromonas salmonicida. Mobile Genetic Elements. e25640.

  • *Une image de cet article a été choisie pour la page couverture de ce journal.

  • 38-Chekabab S.M., Daigle F., Charette S.J., Dozois C.M. and Harel J. (2013) Shiga-toxins are involved in enterohaemorrhagic Escherichia coli survival within Acanthamoeba castellanii. FEMS Microbiol. Lett. 344:86-93.

  • 37-Pluchon C., Sérodes J.-B., Berthiaume C., Charette S. J., Gilbert Y., Filion G., Fournier-Larente J., Rodriguez Pinzon M. J. and Duchaine C. (2013) Haloacetic acid Degradation by a Biofilm in a Simulated Drinking Water Distribution System. WST: Water Supply. 13:447-461.

  • 36-Tanaka K.H., Frenette M. and Charette S.J. (2013) IS-mediated loss of virulence by Aeromonas salmonicida: a tangible piece of an evolutionary puzzle. Mob. Genet. Elements. 3:e23498.

 

2012

  • 35-Chekabab S.M., Daigle F., Charette S.J., Dozois C.M. and Harel J. (2012) Survival of EHEC in the presence of Acanthamoeba castellanii and its dependence on Pho regulon. MicrobiologyOpen, 1: 427–437.

  • 34-Boyle B., Vaillancourt K., Bonifait L., Charette S.J., Gottschalk M. and Grenier D. (2012) Genome Sequence of the Swine Pathogen Streptococcus suis Serotype 2 Strain S735. J. Bact. 194:6343-4.

  • 33*-Tanaka K.H., Dallaire-Dufresne S., Daher R.K., Frenette M. and Charette S.J. (2012) An Insertion Sequence-Dependent Plasmid Rearrangement in Aeromonas salmonicida Causes the Loss of the Type Three Secretion System. PLoS One, 7(3): e33725.

  • *Cet article a été signalé par les éditeurs de Mobile Genetic Elements qui nous ont invité à rédigé un commentaire sur notre article dans leur journal (voir référence #36).

  • 32-Charette S.J., Brochu F., Boyle B., Filion G., Tanaka K.H. and Derome N. (2012) Draft genome sequence of the virulent strain 01-B526 of the fish pathogen Aeromonas salmonicida. J. Bact. 194:722-3.

 

2011

  • 31-Caron M.-A., Charette S.J., Maltais F., Debigaré R. (2011) Studying Cell Signaling in Human Muscle Tissue: What is the Variability of the Western Blot Signal? BMC Research Notes. 4:488.

  • 30-Dallaire-Dufresne S.#, Paquet V.# and Charette S.J. (2011) Dictyostelium discoideum : un modèle pour l’étude de la virulence bactérienne. Can J Micro. 57:699-707.

  • 29-Bonifait L.#, Charette S.J.#, Filion G., Gottschalk M. and Grenier D. (2011) An amoeba host model to evaluate Streptococcus suis virulence. Appl Environ Microbiol. 77:6271-3.

  • 28-Daher R.K., Filion G., Tan S.G.E., Dallaire-Dufresne S., Paquet V.E. and Charette S.J. (2011) Alteration of virulence factors and rearrangement of pAsa5 plasmid caused by the growth of Aeromonas salmonicida in stressful conditions. Vet. Micro. 152:353-60.

 

2010

  • 27-Smith E.W., Lima W.C., Charette S.J., Cosson P. (2010) Starvation induces a slow down of the endocytic pathway in Dictyostelium cells. Euk. Cell. 9:387-92.

  • 26-Cabello J., Neukomm L., Günesdogan U., Lochnit G., Charette S.J., Hengartner M.O. and Schnabel R. (2010) The Wnt pathway controls cell death engulfment, spindle orientation and migration through CED-10/Rac. PLoS Biol. 8:e1000297.

  • 25-Charette S.J., Lambert H., Nadeau P.J., and Landry J. (2010) Protein quantification by chemiluminescent Western blotting: elimination of the antibody factor by dilution series and calibration curve. J. Imm. Meth. 353:148-50.

  • 24-Vial L., Groleau M.-C., Lamarche M.G., Filion G., Castonguay-Vanier J., Dekimpe V., Daigle F., Charette S.J. and Déziel E. (2010) Phase variation has a role in Burkholderia ambifaria niche adaptation ISME journal, 4:49-60.

  • 23-Bellmann K.#, Charette S.J.#, Nadeau P.J., Poirier D.J., Loranger A. and Landry J. (2010) The mechanism whereby heat shock induces apoptosis depends on the innate sensitivity of cells to stress. Cell Stress Chaperones. 15:101-13.

 

2009

  • 22-Fuchs M, Poirier D.J., Séguin S., Carra S., Charette S.J. and Landry J. (2009) Identification of the key structural motifs required for HSPB8/HSPB6-BAG3 interaction. Biochem J., 425:245-55.

  • 21-Nadeau P.J., Charette S.J., Landry J. (2009) REDOX reaction at ASK1-Cys250 is essential for activation of JNK and induction of apoptosis. Mol Biol Cell. 20:3628-37.

  • 20-Blanc C., Charette S.J., Mattei S., Aubry L., Smith E.W., Cosson P. and Letourneur F. (2009) Dictyostelium Tom1 participates to an ancestral ESCRT-0 complex. Traffic, 10:161-71.

 

2008

  • 19-Charette S.J. and Cosson P. (2008) Altered composition and secretion of lysosome-derived compartments in Dictyostelium AP-3 mutant cells. Traffic, 9:588-596.

 

2007

  • 18*-Nadeau P.J., Charette S.J., Toledano M.B. and Landry J. (2007) The oxidation of Ask1 and its reduction by Thioredoxin-1 regulate the activation of JNK by H2O2. Mol Biol Cell. 18:3903-13.

   * Article nominé comme article de l’année dans Molecular Biology of the Cell.

  • 17-Charette S.J. and Cosson P. (2007) A LYST/beige homolog is involved in biogenesis of Dictyostelium secretory lysosomes. J Cell Sci. 120:2338-43.

  • 16-Züllig S., Jovanovic M., Neukomm L, Charette S.J., Lyssenko N., Halleck M.S., Reutelingsperger C., Schlegel R.A., Hengartner M.O. (2007) Phosphatidylserine Exposure Is an Early Marker of Apoptosis in C. elegans and Depends on the P-type ATPase TAT-1. Curr Biol. 17:994-9.

​

2006

  • 15-Cherix N., Froquet R., Charette S.J., Blanc C., Letourneur F., Cosson P. (2006) A Phg2-Arm pathway participates in the nutrient-controlled developmental response in Dictyostelium. Mol. Biol. Cell, 17:4982-7.

  • 14-Charette S.J.#, Mercanti V.#, Letourneur F., Bennett N. and Cosson P. (2006) A role for Adaptor Protein-3 complex in the organization of the endocytic pathway in Dictyostelium. Traffic, 7:1528-38.

  • 13-Mercanti V.#, Charette S.J.# Bennett N., Ryckewaert J.J., Letourneur F. and Cosson P. (2006) Selective membrane exclusion in phagocytic and macropinocytic cups. J Cell Sci, 119:4079-87.

  • 12-Charette S.J. and Cosson P. (2006) Exocytosis of late endosomes does not directly contribute membrane to the formation of phagocytic cups or pseudopods in Dictyostelium. FEBS letters, 580:4923-8.

  • 11-Cornillon S., Gebbie L., Benghezal M., Nair P., Keller S., Charette S. J., Brückert F., Letourneur F. and Cosson P. (2006) An Integrin-related Adhesion Molecule in Free-living Amoebae. EMBO reports, 7:617-21.

  • 10-Charette S.J. Cornillon S. and Cosson P. (2006) Identification of low frequency knockout mutants in Dictyostelium discoideum. J Biotechnol. 122:1-4.

  • 9-Benghezal M., Tournebize R., Froquet R., Marchetti A., Lardy B., Sansonetti P., Charette S.J. and Cosson P. (2006) Specific host genes required for the killing of Klebsiella bacteria by phagocytes. Cell Microbiol. 8:139-148.

 

2005

  • 8*-Blanc, C., Charette S., Cherix N., Lefkir Y., Cosson P. and Letourneur F. (2005) A novel PI(4,5)P2 binding domain targeting the Phg2 kinase to the membrane in Dictyostelium cells. Eur J Cell Biol. 84:951-960.

   *Une image de cet article a été choisie pour la page couverture de ce journal.

 

2004

  • 7-Marchetti A., Mercanti V., Cornillon S., Alibaud L., Charette S.J., Cosson P. (2004) Formation of multivesicular endosomes by regulated inward budding. J Cell Sci. 117:6053-9.

  • 6-Charette S.J., Cosson P. (2004) Preparation of genomic DNA from Dictyostelium discoideum for PCR analysis. Biotechniques 36:574-5.

  •  

2001

  • 5-Charette S.J., Lambert H., Landry J. (2001) A kinase-independent function of Ask1 in caspase-independent cell death. J Biol Chem 276:36071-4.

 

2000

  • 4-Charette S.J., Landry J. (2000) The interaction of HSP27 with Daxx identifies a potential regulatory role of HSP27 in Fas-induced apoptosis. Ann N Y Acad Sci. 926:126-31.

  • 3-Charette S.J., Lavoie J.N., Lambert H., Landry J. (2000) Inhibition of Daxx-mediated apoptosis by heat shock protein 27. Mol Cell Biol. 20:7602-12.

 

1999

  • 2-Theriault J.R., Charette S.J., Lambert H. and Landry J. (1999) Cloning and characterization of hGMEB1, a novel glucocorticoid modulatory element binding protein. FEBS Lett 452:170-6.

  • 1-Lambert H., Charette S.J., Bernier A.F., Guimond A. and Landry J. (1999) HSP27 multimerization mediated by phosphorylation-sensitive intermolecular interactions at the amino terminus. J Biol Chem 274:9378-85.

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